Skip to contents

Integrate correlation pairs of KZNFs and TEs

kznfsTEsPairs.Rd

This function takes the correlation result from TEKRABber and repeatmasker annotation to integrate a table include positive and negative correlation pairs of KRAB-ZNFs and TEs with their TE families and classes information. You can specify filename and title to save as html file or assign to a variable to get the csv file.

Usage

kznfsTEsPairs(df, rmsk, title = NULL, fileName = NULL)

Arguments

df

a correlation result dataframe from TEKRABber

rmsk

a transposable elements repeatmasker annotation

title

title when open html file

fileName

name for saving html files

Value

a KZNFs TEs pairs table

Examples

data(hmCorrResult)
data(hg19rmsk_info)

df <- kznfsTEsPairs(
    hmCorrResult,
    hg19rmsk_info,
    title="human KZNFsTEsPairs",
    fileName="hmKZNFsTEsPairs.html"
)
#> Joining with `by = join_by(teName)`
#> Joining with `by = join_by(teName)`